PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00084.1.g00470.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 244aa    MW: 26861.3 Da    PI: 10.5044
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00084.1.g00470.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.9e-18125179256
                                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   rk+ ++t+ q   Le+ F+ ++ +++++++eLA++ gL+ rqV+vWFqNrRa+ k
  Zpz_sc00084.1.g00470.1.sm.mk 125 RKKLRLTSAQAALLEDSFRAHNILTHAQKQELARRAGLSARQVQVWFQNRRARTK 179
                                   788899***********************************************98 PP

2HD-ZIP_I/II103.91.3e-33125213189
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   +kk+rl++ q++lLE+sF++++ L++ +K+elar+ gl++rqv+vWFqnrRARtk+k++E+d++ L+r+ d+l++enerL+
  Zpz_sc00084.1.g00470.1.sm.mk 125 RKKLRLTSAQAALLEDSFRAHNILTHAQKQELARRAGLSARQVQVWFQNRRARTKLKKTEVDCKLLRRWRDRLTDENERLR 205
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLre 89 
                                   ++ +eLr+
  Zpz_sc00084.1.g00470.1.sm.mk 206 RDLDELRA 213
                                   ******94 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.2E-18106182IPR009057Homeodomain-like
SuperFamilySSF466893.13E-18117182IPR009057Homeodomain-like
PROSITE profilePS5007117.038121181IPR001356Homeobox domain
SMARTSM003894.2E-15123185IPR001356Homeobox domain
PfamPF000467.9E-16125179IPR001356Homeobox domain
CDDcd000865.95E-14125182No hitNo description
PRINTSPR000316.9E-6152161IPR000047Helix-turn-helix motif
PROSITE patternPS000270156179IPR017970Homeobox, conserved site
PRINTSPR000316.9E-6161177IPR000047Helix-turn-helix motif
SMARTSM003409.3E-13181224IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MSSLTTAGSR SSMEECSAEF DTRLSLEIGE TSRATPPPQS LRLFGELIIS PQEQDHGGDG  60
SLGHRGTTRV PVARRKRRAE CGGVASGDID AAGGGRQNKK AIRTLQSSEE DNGDRQRIPS  120
DGGSRKKLRL TSAQAALLED SFRAHNILTH AQKQELARRA GLSARQVQVW FQNRRARTKL  180
KKTEVDCKLL RRWRDRLTDE NERLRRDLDE LRAVSAARLP AAAVSVVCPY CCDKKMVAVA  240
GDVA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123129SRKKLRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951890.12e-66PREDICTED: putative homeobox-leucine zipper protein HOX26
SwissprotQ67UX62e-45HOX26_ORYSJ; Putative homeobox-leucine zipper protein HOX26
TrEMBLK3YVK92e-66K3YVK9_SETIT; Uncharacterized protein
STRINGSi018305m5e-66(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83153249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.12e-26homeobox-leucine zipper protein 17